The most cleanest way to shutdown MongoDB is by executing the below commands,
> use admin
> db.shutdownServer();
Example:
> use admin
switched to db admin
> db.shutdownServer();
server should be down...
You can also stop MongoDB mongod service running on Ubuntu, run the command sudo service mongod stop
# sudo service mongod stop
or,
# sudo service mongodb stop
* Stopping database mongodb [OK]
You can also check the status of the server using the command,
# sudo service mongodb status
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